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1

Concepts of the last eukaryotic common ancestor

O’Malley, Maureen A., Leger, Michelle M., Wideman, Jeremy G., Ruiz-Trillo, Iñaki

Journal:

Nature Ecology & Evolution

Year:

2019

Language:

english

File:

PDF, 1.93 MB

english, 2019

2

Losing Complexity: The Role of Simplification in Macroevolution

O’Malley, Maureen A., Wideman, Jeremy G., Ruiz-Trillo, Iñaki

Journal:

Trends in Ecology & Evolution

Year:

2016

Language:

english

File:

PDF, 2.02 MB

english, 2016

3

Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes

Iñaki Ruiz-Trillo, Marta Riutort, H. Matthew Fourcade, Jaume Baguñà, Jeffrey L. Boore

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 321 KB

english, 2004

4

The Nemertodermatida are basal bilaterians and not members of the Platyhelminthes

Ulf Jondelius, Iñaki Ruiz-Trillo, Jaume Baguñà, Marta Riutort

Journal:

Zoologica Scripta

Year:

2002

Language:

english

File:

PDF, 1.58 MB

english, 2002

5

Capsaspora owczarzaki is an independent opisthokont lineage

Iñaki Ruiz-Trillo, Yuji Inagaki, Lesley A. Davis, Sigmund Sperstad, Bjarne Landfald, Andrew J. Roger

Journal:

Current Biology

Year:

2004

Language:

english

File:

PDF, 98 KB

english, 2004

6

The origins of multicellularity: a multi-taxon genome initiative

Iñaki Ruiz-Trillo, Gertraud Burger, Peter W.H. Holland, Nicole King, B. Franz Lang, Andrew J. Roger, Michael W. Gray

Journal:

Trends in Genetics

Year:

2007

Language:

english

File:

PDF, 1.41 MB

english, 2007

7

Evolution of the MAGUK protein gene family in premetazoan lineages

Alex de Mendoza, Hiroshi Suga, Iñaki Ruiz-Trillo

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 1.25 MB

english, 2010

8

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

Ruiz-Trillo, I.

Journal:

Year:

1999

Language:

english

File:

PDF, 237 KB

english, 1999

9

Ancient origin of the integrin-mediated adhesion and signaling machinery

Sebe-Pedros, A., Roger, A. J., Lang, F. B., King, N., Ruiz-Trillo, I.

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 758 KB

english, 2010

10

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 || Volvocine Algae: From Simple to Complex Multicellularity

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

11

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 || The Evolutionary Ecology of Multicellularity: The Volvocine Green Algae as a Case Study

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 940 KB

english, 2015

12

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 || Cells Acting as Lenses: A Possible Role for Light in the Evolution of Morphological Asymmetry in Multicellular Volvocine Algae

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 763 KB

english, 2015

13

The Mysterious Evolutionary Origin for the GNE Gene and the Root of Bilateria

de Mendoza, A., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 981 KB

english, 2011

14

The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity

Sebé-Pedrós, Arnau, Ballaré, Cecilia, Parra-Acero, Helena, Chiva, Cristina, Tena, Juan J., Sabidó, Eduard, Gómez-Skarmeta, José Luis, Di Croce, Luciano, Ruiz-Trillo, Iñaki

Journal:

Year:

2016

Language:

english

File:

PDF, 4.97 MB

english, 2016

15

Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway

Ocaña-Pallarès, Eduard, Najle, Sebastián R., Scazzocchio, Claudio, Ruiz-Trillo, Iñaki, Rokas, Antonis

Journal:

Year:

2019

Language:

english

File:

PDF, 8.69 MB

english, 2019

16

New genomes, new taxa and deep questions in the eukaryotic tree of life: a meeting report on the EMBO comparative genomics conference

Alex de Mendoza, Iñaki Ruiz-Trillo

Journal:

Year:

2011

Language:

english

File:

PDF, 99 KB

english, 2011

17

The Evolutionary History of Lysine Biosynthesis Pathways Within Eukaryotes

Guifré Torruella, Hiroshi Suga, Marta Riutort, Juli Peretó, Iñaki Ruiz-Trillo

Journal:

Journal of Molecular Evolution

Year:

2009

Language:

english

File:

PDF, 494 KB

english, 2009

18

Insights into the Evolutionary Origin and Genome Architecture of the Unicellular Opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica

IŇAKI RUIZ-TRILLO, CHRISTOPHER E. LANE, JOHN M. ARCHIBALD, ANDREW J. ROGER

Journal:

Journal of Eukaryotic Microbiology

Year:

2006

Language:

english

File:

PDF, 351 KB

english, 2006

19

Abstracts

Salvador Carranza, Iñaki Ruiz-Trillo, Gonzalo Giribet, Carles Ribera, Marta Riutort, Jaume Baguñà

Journal:

Year:

1998

Language:

english

File:

PDF, 15 KB

english, 1998

20

Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases

Suga, H., Dacre, M., de Mendoza, A., Shalchian-Tabrizi, K., Manning, G., Ruiz-Trillo, I.

Journal:

Science Signaling

Year:

2012

Language:

english

File:

PDF, 517 KB

english, 2012

21

Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains

Torruella, G., Derelle, R., Paps, J., Lang, B. F., Roger, A. J., Shalchian-Tabrizi, K., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2012

Language:

english

File:

PDF, 538 KB

english, 2012

22

A genomic survey shows that the haloarchaeal type tyrosyl tRNA synthetase is not a synapomorphy of opisthokonts

John D.L. Shadwick, Iñaki Ruiz-Trillo

Journal:

European Journal of Protistology

Year:

2012

Language:

english

File:

PDF, 582 KB

english, 2012

23

Premetazoan Origin of the Hippo Signaling Pathway

Arnau Sebé-Pedrós, Yonggang Zheng, Iñaki Ruiz-Trillo, Duojia Pan

Journal:

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

24

Molecular Phylogeny of Unikonts: New Insights into the Position of Apusomonads and Ancyromonads and the Internal Relationships of Opisthokonts

Jordi Paps, Luis A. Medina-Chacón, Wyth Marshall, Hiroshi Suga, Iñaki Ruiz-Trillo

Journal:

Year:

2013

Language:

english

File:

PDF, 575 KB

english, 2013

25

Development of ichthyosporeans sheds light on the origin of metazoan multicellularity

Suga, Hiroshi, Ruiz-Trillo, Iñaki

Journal:

Developmental Biology

Year:

2013

Language:

english

File:

PDF, 1.91 MB

english, 2013

26

A robust molecular phylogeny of the Tricladida (Platyhelminthes: Seriata) with a discussion on morphological synapomorphies

Carranza, S., Littlewood, D. T. J., Clough, K. A., Ruiz-Trillo, I., Baguna, J., Riutort, M.

Journal:

Proceedings Biological Sciences

Year:

1998

Language:

english

File:

PDF, 359 KB

english, 1998

27

Lack of Csk-Mediated Negative Regulation in a Unicellular Src Kinase

Schultheiss, Kira P., Suga, Hiroshi, Ruiz-Trillo, Iñaki, Miller, W. Todd

Journal:

Year:

2012

Language:

english

File:

PDF, 2.77 MB

english, 2012

28

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages

de Mendoza, A., Sebe-Pedros, A., Sestak, M. S., Matejcic, M., Torruella, G., Domazet-Loso, T., Ruiz-Trillo, I.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 919 KB

english, 2013

29

Earliest Holozoan Expansion of Phosphotyrosine Signaling

Suga, H., Torruella, G., Burger, G., Brown, M. W., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 746 KB

english, 2014

30

Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division

Desvoyes, B., de Mendoza, A., Ruiz-Trillo, I., Gutierrez, C.

Journal:

Journal of Experimental Botany

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

31

A Phylogenomic Investigation into the Origin of Metazoa

Ruiz-Trillo, I., Roger, A. J., Burger, G., Gray, M. W., Lang, B. F.

Journal:

Molecular Biology and Evolution

Year:

2008

Language:

english

File:

PDF, 189 KB

english, 2008

32

The others: our biased perspective of eukaryotic genomes

del Campo, Javier, Sieracki, Michael E., Molestina, Robert, Keeling, Patrick, Massana, Ramon, Ruiz-Trillo, Iñaki

Journal:

Trends in Ecology & Evolution

Year:

2014

Language:

english

File:

PDF, 949 KB

english, 2014

33

A Robust Molecular Phylogeny of the Tricladida (Platyhelminthes: Seriata) with a Discussion on Morphological Synapomorphies

Salvador Carranza, D. Timothy J. Littlewood, Karen A. Clough, Inaki Ruiz-Trillo, Jaume Baguna and Marta Riutort

Journal:

Proceedings Biological Sciences

Year:

1998

Language:

english

File:

PDF, 1.42 MB

english, 1998

34

Environmental Survey Meta-analysis Reveals Hidden Diversity among Unicellular Opisthokonts

del Campo, J., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2013

Language:

english

File:

PDF, 216 KB

english, 2013

35

Premetazoan Ancestry of the Myc-Max Network

Young, S. L., Diolaiti, D., Conacci-Sorrell, M., Ruiz-Trillo, I., Eisenman, R. N., King, N.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.11 MB

english, 2011

36

Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki

Sebe-Pedros, A., de Mendoza, A., Lang, B. F., Degnan, B. M., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 422 KB

english, 2011

37

Evolution and Classification of Myosins, a Paneukaryotic Whole-Genome Approach

Sebe-Pedros, A., Grau-Bove, X., Richards, T. A., Ruiz-Trillo, I.

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 705 KB

english, 2014

38

Insights into the Origin of Metazoan Filopodia and Microvilli

Sebe-Pedros, A., Burkhardt, P., Sanchez-Pons, N., Fairclough, S. R., Lang, B. F., King, N., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

39

The Eukaryotic Ancestor Had a Complex Ubiquitin Signaling System of Archaeal Origin

Grau-Bove, X., Sebe-Pedros, A., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

40

A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians

Ruiz-Trillo, I., Paps, J., Loukota, M., Ribera, C., Jondelius, U., Baguna, J., Riutort, M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2002

Language:

english

File:

PDF, 419 KB

english, 2002

41

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing

del Campo, Javier, Mallo, Diego, Massana, Ramon, de Vargas, Colomban, Richards, Thomas A., Ruiz-Trillo, Iñaki

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 504 KB

english, 2015

42

The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity

de Mendoza, A., Sebe-Pedros, A., Ruiz-Trillo, I.

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 881 KB

english, 2014

43

Early evolution of the T-box transcription factor family

Sebe-Pedros, A., Ariza-Cosano, A., Weirauch, M. T., Leininger, S., Yang, A., Torruella, G., Adamski, M., Adamska, M., Hughes, T. R., Gomez-Skarmeta, J. L., Ruiz-Trillo, I.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 1.11 MB

english, 2013

44

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 ||

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 9.43 MB

english, 2015

45

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 || Multicellularity in Bacteria: From Division of Labor to Biofilm Formation

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 656 KB

english, 2015

46

Sawyeria marylandensis (Heterolobosea) Has a Hydrogenosome with Novel Metabolic Properties

Barbera, M. J., Ruiz-Trillo, I., Tufts, J. Y. A., Bery, A., Silberman, J. D., Roger, A. J.

Journal:

Eukaryotic Cell

Year:

2010

Language:

english

File:

PDF, 3.07 MB

english, 2010

47

Tracing the Evolutionary History of Inositol, 1, 4, 5-Trisphosphate Receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs

Alzayady, K. J., Sebe-Pedros, A., Chandrasekhar, R., Wang, L., Ruiz-Trillo, I., Yule, D. I.

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 4.58 MB

english, 2015

48

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 || Developmental Signalling and Emergence of Animal Multicellularity

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 977 KB

english, 2015

49

[Advances in Marine Genomics] Evolutionary Transitions to Multicellular Life Volume 2 || Signaling in Swarming and Aggregating Myxobacteria

Ruiz-Trillo, Iñaki, Nedelcu, Aurora M.

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

50

A Genomic Survey of HECT Ubiquitin Ligases in Eukaryotes Reveals Independent Expansions of the HECT System in Several Lineages

Grau-Bove, X., Sebe-Pedros, A., Ruiz-Trillo, I.

Journal:

Genome Biology and Evolution

Year:

2013

Language:

english

File:

PDF, 585 KB

english, 2013